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Mr Joshua Lambert

Research Fellow

United Kingdom

I am a Research Fellow in the department of Infectious Disease Epidemiology and Dynamics (IDE-D) and the Centre for Mathematical Modelling of Infectious Diseases (CMMID).  My current work focuses on developing individual-level transmission models to understand the impact of interventions for containment of emerging epidemics, as well as the application of epidemiological parameters in epidemiological analysis.

 

My previous role at LSHTM was as a Research Software Engineer working in the Epiverse-TRACE initiative. I primarily developed R packages to enable epidemiologists to conduct reliable and robust analysis on disease outbreak data.

My background is in evolutionary biology and from 2019-2024 I did my PhD at the University of Groningen.

Affiliations

Department of Infectious Disease Epidemiology and Dynamics
Faculty of Epidemiology and Population Health

Teaching

For my role at LSHTM I teach across a variety of modules across epidemiology, modelling and programming. I have taught on a variety of topics to date at various higher education institutes, from evolutionary biology and ecology, to mathematical modelling, to software development including developing R packages.

Research

My interests are in understanding how we can make public health policy-informing insight with by developing and applying infectious disease models. Throughout my research I look to develop open source software that others in public health can use. I also maintain several pieces of software that are used in outbreak analytics.

Selected Publications

joshwlambert/propose
LAMBERT, JW;
2026
Zenodo
mrc-ide/epireview
Bhatia, S; Morgenstern, C; Nash, R; Myles, T; McCabe, R; McCain, K; Santoni, C; Rawson, T; LAMBERT, JW; Doohan, P; Pesántez, SR; Cori, A; Cuomo-Dannenburg, G; Hicks, JT; Unwin, J; Liétar, P; Sheppard, RJ;
2026
Zenodo
simulist: An R package to simulate disease outbreak line list and contacts data
LAMBERT, JW; KUCHARSKI, AJ; Cuartero, CT;
2026
Journal of Open Source Software
epireview: Tools to update and summarise the latest pathogen data from the Pathogen Epidemiology Review Group (PERG)
Naidoo, T; Nash, R; Morgenstern, C; Doohan, P; McCabe, R; LAMBERT, JW; Sheppard, R; Santoni, C; Rawson, T; Ruybal-Pesántez, S; Unwin, JH; Cuomo-Dannenburg, G; McCain, K; Hicks, J; Cori, A; Bhatia, S;
2025
Github
Habitat openness and squamate color evolution over deep time.
Goldenberg, J; Bisschop, K; LAMBERT, JW; Nicolaï, MP J; Etienne, RS; D'Alba, L; Shawkey, MD;
2025
Nature communications
Using phylogenetic data for island biogeography analyses: The DAISIEprep package.
LAMBERT, JW; Roeble, L; Pannetier, T; Etienne, RS; Valente, L;
2025
Molecular phylogenetics and evolution
joshwlambert/DAISIEprepExtra
LAMBERT, JW;
2024
Zenodo
Estimates of epidemiological parameters for H5N1 influenza in humans: a rapid review
Ward, J; LAMBERT, J; RUSSELL, T; AZAM, J; KUCHARSKI, A; FUNK, S; Quilty, B; Gressani, O; Hens, N; EDMUNDS, J;
2024
medRxiv
epiparameterDB: Database of Epidemiological Parameters
LAMBERT, JW; KUCHARSKI, AJ; Tamayo, C;
2024
Comprehensive R Archive Network
epichains: Simulating and Analysing Transmission Chain Statistics Using Branching Process Models
AZAM, JM; FUNK, S; Finger, F; Kamvar, ZN; Gruson, H; Mané, K; Gupte, P; LAMBERT, JW;
2024
Comprehensive R Archive Network
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